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Bücher | November 2002 | Handbook of Graphs and Networks | Inhaltsverzeichnis
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  Contents  
 
  Preface V
  List of contributors XIV
1 Mathematical results on scale-free random graphs
(Béla Bollobás and Oliver M. Riordan)
1
1 Introduction 1
1.2 Classical models of random graphs 2
1.3 Results for classical random graphs 4
1.4 The Watts-Strogatz `small-world' model 5
1.5 Scale-free models 6
1.6 The Barabási-Albert model 7
1.7 The LCD model and G(n)m 9
1.8 The Buckley-Osthus model 11
1.9 The copying model 12
1.10 The Cooper-Frieze model 13
1.11 Directed scale-free graphs 15
1.12 Clustering coefficient and small subgraphs 17
1.13 Pairings on [0, 1]and the diameter of the LCD model 22
1.14 Robustness and vulnerability 24
1.15 The case [0, 1]: plane-oriented recursive trees 27
1.16 Conclusion 32
  References 32
2 Random graphs as models of networks
(Mark E. J. Newman)
35
2.1 Introduction 35
2.2 Random graphs with specified degree distributions 40
2.3 Probability generating functions 45
2.3.1 Properties of generating functions 46
2.3.2 Examples 46
2.4 Properties of undirected graphs 47
2.4.1 Distribution of component sizes 47
2.4.2 Mean component size 50
2.4.3 Above the phase transition 51
2.5 Properties of directed graphs 53
2.5.1 Generating functions 54
2.5.2 Results 54
2.6 Networks with clustering 56
2.7 Models defined on random graphs 58
2.7.1 Network resilience 58
2.7.2 Epidemiology 61
2.7.3 The SIR model 62
2.7.4 Solution of the SIR model 63
2.8 Summary 65
  References 65
3 Emergence of scaling in complex networks
(Albert-László Barabási)
69
3.1 Introduction 69
3.2 Network models 70
3.2.1 Random networks 70
3.2.2 Scale-free networks 70
3.2.3 Scale-free model 73
3.3 Fitness model and Bose-Einstein condensation 75
3.4 The Achilles' Heel of complex networks 76
3.5 A deterministic scale-free model 79
3.6 Outlook 81
3.7 Acknowledgments 82
  References 82
4 Structural properties of scale-free networks
(Reuven Cohen, Shlomo Havlin, and Daniel ben-Avraham)
85
4.1 Introduction 85
4.1.1 Random graphs 85
4.1.2 Scale-free networks 86
4.2 Small and Ultra-small worlds 87
4.2.1 Diameter of scale-free networks 88
4.2.2 Minimal graphs and lower bound 88
4.2.3 The general case of random scale-free networks 89
4.3 Percolation 92
4.3.1 Random breakdown 92
4.3.2 Percolation critical threshold 93
4.3.3 Generating functions 95
4.3.4 Intentional attack 96
4.3.5 Critical exponents 97
4.3.6 Fractal dimension 100
4.4 Percolation in directed networks 101
4.4.1 Threshold 102
4.4.2 Critical exponents 103
4.5 Efficient immunization strategies 104
4.5.1 Acquaintance immunization 105
4.6 Summary and outlook 106
  References 107
5 Epidemics and immunization in scale-free networks
(Romualdo Pastor-Satorras and Alessandro Vespignani)
111
5.1 Introduction 111
5.2 Computers and epidemiology 112
5.3 Epidemic spreading in homogeneous networks 114
5.4 Real data analysis 116
5.5 Epidemic spreading in scale-free networks 118
5.5.1 Analytic solution for the Barabási-Albert network 119
5.5.2 Finite size scale-free networks 122
5.6 Immunization of scale-free networks 123
5.6.1 Uniform immunization 124
5.6.2 Targeted immunization 125
5.7 Conclusions 127
  References 128
6 Cells and genes as networks in nematode development and evolution
(Ralf J. Sommer)
131
6.1 Introduction 131
6.2 Nematode developmental biology: studying processes at a cellular level 132
6.3 Nematode Vulva formation as a case study 132
6.4 Nematode collections 136
6.5 Cellular networks: how cells change their function 136
6.5.1 Evolution of vulva position 136
6.5.2 Evolution of vulval cell fate specification 136
6.6 Genetic networks: how genes change their function 139
6.6.1 Evolution of lin-39 function 139
6.6.2 Evolution of mab-5 function 141
6.7 Conclusion 142
  References 142
7 Complex networks in genomics and proteomics
(Ricard V. Solé and Romualdo Pastor-Satorras)
145
7.1 Introduction 145
7.2 Cellular networks 148
7.2.1 Two-gene networks 149
7.2.2 Random networks 150
7.3 Three interconnected levels of cellular nets 153
7.4 Small world graphs and scale-free nets 154
7.5 Scale-free proteomes: gene duplication models 157
7.5.1 Mean-field rate equation for the average connectivity 157
7.5.2 Rate equation for the node distribution nk 159
7.5.3 Numerical simulations 162
7.6 Discussion 164
  References 164
8 Correlation profiles and motifs in complex networks
(Sergei Maslov, Kim Sneppen, and Uri Alon)
168
8.1 Introduction 168
8.2 Randomization algorithm: Constructing the proper null model 172
8.3 Correlation profiles: Yeast molecular networks and the Internet 177
8.4 Network motifs: Transcriptional regulation in E. coli 189
8.5 Discussion: What it may all mean? 194
  References 196
9 Theory of interacting neural networks
(Wolfgang Kinzel)
199
9.1 Introduction 199
9.2 On-line training 200
9.3 Generalisation 201
9.4 Time series prediction and generation 203
9.5 Self-interaction 206
9.6 Agents competing in a closed market 207
9.7 Synchronisation by mutual learning 208
9.8 Cryptography 210
9.9 Conclusions 213
  References 216
10 Modelling food webs
(Barbara Drossel and Alan J. McKane)
218
10.1 Introduction 218
10.2 Basic properties of food webs 221
10.3 Static models 226
10.4 Dynamic models 227
10.4.1 Two-species models 228
10.4.2 Generalized dynamical equations 230
10.4.3 The complexity-stability debate 232
10.5 Assembly models and evolutionary models 235
10.5.1 Toy models 235
10.5.2 Species assembly models 236
10.5.3 Evolutionary models 238
10.6 Conclusions 241
  References 242
11 Traffic networks
(Kai Nagel)
248
11.1 Introduction 248
11.2 Dynamics on networks 250
11.2.1 The four step process and static assignment 250
11.2.2 Simple link dynamics and the queue model 252
11.2.3 Virtual reality micro-simulations 253
11.2.4 CA implementations of virtual reality micro-simulations 255
11.2.5 Traffic in networks 258
11.3 Particles are intelligent 260
11.3.1 Route generation 260
11.3.2 Activity generation 261
11.3.3 Housing, land use, freight, life style, et al 261
11.3.4 Day-to-day learning, feedback, and relaxation 261
11.3.5 Within-day re-planning 262
11.3.6 Individualization of knowledge 263
11.3.7 State of the art 263
11.4 Distributed computing and the network of interactions 264
11.4.1 Distributed computing of the traffic micro-simulation 265
11.4.2 Distributed computing of plans generation 267
11.5 Outlook: Dynamics of networks 268
11.6 Conclusion 268
  References 269
12 Economic networks
(Alan Kirman)
273
12.1 Introduction 273
12.2 Economics and sociology 274
12.3 The economic consequences of networks 275
12.4 Fixed network: stochastic interaction 278
12.5 Random graphs and networks 280
12.6 Emerging networks 281
12.7 The strategic formation of networks 282
12.8 Emerging random graphs 283
12.9 The identification problem 291
12.10 Conclusion 292
  References 293
13 Local search in unstructured networks
(Lada A. Adamic, Rajan M. Lukose, Bernardo A. Huberman)
295
13.1 Introduction 295
13.2 Search in power-law random graphs 297
13.2.1 Intuition 297
13.2.2 Random walk search 298
13.2.3 Search utilizing high degree nodes 301
13.3 Simulation 303
13.4 Comparison with Poisson distributed graphs 306
13.5 Gnutella 308
13.6 Path finding 310
13.7 Shortening the shortest path 312
13.7.1 Iterative deepening 313
13.8 Adaptive search 314
13.9 Conclusion 315
  References 316
14 Accelerated growth of networks
(Sergei N. Dorogovtsev and Jose F. F. Mendes)
318
14.1 Acceleration 318
14.2 Reasons for acceleration 321
14.3 Degree distributions of networks 321
14.3.1 Types of degree distribution 321
14.3.2 Power-law degree distribution 324
14.4 General relations for accelerated growth 326
14.5 Scaling relations for accelerated growth 328
14.6 Degree distributions produced by acceleration 329
14.6.1 Model for < 2 329
14.6.2 Model for > 2 330
14.6.3 Dynamically induced accelerated growth 330
14.6.4 Partial copying of edges and multifractality 330
14.7 Evolution of the Word Web 331
14.8 Wealth distribution in evolving societies 336
14.8.1 Stable (stagnating) societies 337
14.8.2 Developing and degrading societies 337
  References 339
15 Social percolators and self organized criticality
(Gérard Weisbuch and Sorin Solomon)
342
15.1 Introduction 342
15.2 Social percolation 343
15.2.1 Simple models 343
15.3 Adjustment meta-dynamics 346
15.3.1 Slow adjustment 346
15.3.2 Fast adjustment 347
15.4 Conclusions 351
  References 353
16 Graph theory and the evolution of autocatalytic networks
(Sanjay Jain and Sandeep Krishna)
355
16.1 Introduction 355
16.2 Graph theory and autocatalytic sets . 357
16.2.1 Directed graphs and their adjacency matrices 357
16.2.2 Autocatalytic sets 363
16.3 A dynamical system on a fixed graph 366
16.3.1 Attractors of equation (16.1) 368
16.4 Graph dynamics 375
16.5 Self Organization 377
16.5.1 The random phase 378
16.5.2 The growth phase 381
16.5.3 The organized phase 384
16.6 Catastrophes and recoveries in the organized phase 384
16.6.1 Catastrophes, core-shifts and a classification of proximate causes 389
16.6.2 Recoveries 391
16.6.3 Correlation between graph theoretic nature of perturbation and its short and long term impact 392
16.7 Concluding remarks 392
  References 394
Index 396

 
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