Computational Methods for Mass Spectrometry Proteomics
1. Auflage Dezember 2007
296 Seiten, Hardcover
Praktikerbuch
Kurzbeschreibung
This book uniquely provides basic knowledge and principles of proteomic bioinformatics and mass spectrometry. Computational Methods for Mass Spectrometry Proteomics covers the bioinformatics problems and how they are solved, which types of programs are used and the different principles / algorithms underlying these programs. A description of the instruments used is also given. The book includes many examples to help make the subject practical and accessible.
Proteomics is the study of the subsets of proteins present in different parts of an organism and how they change with time and varying conditions. Mass spectrometry is the leading technology used in proteomics, and the field relies heavily on bioinformatics to process and analyze the acquired data. Since recent years have seen tremendous developments in instrumentation and proteomics-related bioinformatics, there is clearly a need for a solid introduction to the crossroads where proteomics and bioinformatics meet.
Computational Methods for Mass Spectrometry Proteomics describes the different instruments and methodologies used in proteomics in a unified manner. The authors put an emphasis on the computational methods for the different phases of a proteomics analysis, but the underlying principles in protein chemistry and instrument technology are also described. The book is illustrated by a number of figures and examples, and contains exercises for the reader. Written in an accessible yet rigorous style, it is a valuable reference for both informaticians and biologists.
Computational Methods for Mass Spectrometry Proteomics is suited for advanced undergraduate and graduate students of bioinformatics and molecular biology with an interest in proteomics. It also provides a good introduction and reference source for researchers new to proteomics, and for people who come into more peripheral contact with the field.
Preface
1 Protein, Proteome, and Proteomics
2 Protein Separation - 2D Gel Electrophoresis
dimension
3 Protein Digestion
4 Peptide Separation - HPLC
phase chromatography
5 Fundamentals of Mass Spectrometry
6 Mass Spectrometry - MALDI-TOF
7 Protein Identification and Characterization by MS
8 Tandem MS or MS/MS Analysis
9 Fragmentation Models
10 Identification and Characterization by MS/MS
11 Spectral Comparisons
12 Sequencial Comparison - de novo Sequencing
13 Database Searching for De Novo Sequences
flanking amino acids
14 Large-Scale Proteomics
15 Quantitative Mass Spectrometry-Based Proteomics
16 Peptides to Proteins
of masses
17 Top-Down Proteomics
and mass calculation
18 Standards
Bibliography
Index